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Bedtools Command: Group File Columns Sum

Use for group file columns sum with Bedtools. Exact CLI syntax to group file columns sum using Bedtools.

When to use this: Use for group file columns sum with Bedtools.

Command Syntax

bedtools groupby -i <path/to/file> -c 1-3,5 -g 6 -o sum

bedtools groupby -i <path/to/file> -c 1-3,5 -g 6 -o sum

Command Breakdown

-i: Command Option; Tool-specific option used by this command invocation.
-c: Command Option; Tool-specific option used by this command invocation.
-g: Command Option; Tool-specific option used by this command invocation.
-o: Command Option; Tool-specific option used by this command invocation.

FAQ

Purpose: Exact syntax to group file columns sum using Bedtools.

Test path: Replace placeholders and run destructive commands in a disposable workspace first.

Flag behavior: Tool version, platform, and shell can change behavior.

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Related Operations

Bedtools Command: Closest Features With Distance bedtools closest -a <path/to/file1.bed> -b <path/to/file2.bed> -d Bedtools Command: Convert Bam To Bed bedtools bamtobed -i <path/to/file.bam> > <path/to/file.bed> Bedtools Command: Find Closest Features bedtools closest -a <path/to/file1.bed> -b <path/to/file2.bed> -d Bedtools Command: Group By Columns And Sum bedtools groupby -i <path/to/file> -c 1-3,5 -g 6 -o sum Bedtools Command: Group File Sum Operations bedtools groupby -i <path/to/file> -c 1-3,5 -g 6 -o sum

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