compseq
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Compseq Command: Approximate Codon Frequencies Calculate Expected
Use for approximate codon frequencies calculate expected with Compseq. Exact CLI syntax to approximate codon frequencies calculate expected using Compseq.
When to use this: Use for approximate codon frequencies calculate expected with Compseq.
Command Syntax
compseq -sequence <path/to/human_proteome.fasta> -word 3 <path/to/output_file.comp> -nozero -calcfreqcompseq -sequence <path/to/human_proteome.fasta> -word 3 <path/to/output_file.comp> -nozero -calcfreqCommand Breakdown
-sequence- Command Option
- Tool-specific option used by this command invocation.
-word- Command Option
- Tool-specific option used by this command invocation.
-nozero- Command Option
- Tool-specific option used by this command invocation.
-calcfreq- Command Option
- Tool-specific option used by this command invocation.
FAQ
Purpose: Exact syntax to approximate codon frequencies calculate expected using Compseq.
Test path: Replace placeholders and run destructive commands in a disposable workspace first.
Flag behavior: Tool version, platform, and shell can change behavior.
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Related Operations
Compseq Command: Count Amino Acid Pairs Frequencies
compseq <path/to/input_protein.fasta> -word 2 <path/to/output_file.comp> Compseq Command: Count Amino Acid Triplets Compare Previous Run compseq -sequence <path/to/human_proteome.fasta> -word 3 <path/to/output_file1.comp> -nozero -infile <path/to/output_file2.comp> Compseq Command: Count Codons Frame Shifted By Three compseq -sequence <path/to/input_rna.fasta> -word 3 <path/to/output_file.comp> -nozero -frame 3 Compseq Command: Count Codons Reading Frame Ignore Overlaps compseq -sequence <path/to/input_rna.fasta> -word 3 <path/to/output_file.comp> -nozero -frame <1> Compseq Command: Count Hexanucleotides Frequencies Ignore Zero compseq <path/to/input_dna.fasta> -word 6 <path/to/output_file.comp> -nozero