nextflow
Verified for current stable LTS
Nextflow Command: Run Pipeline With Specific Work Directory And Report
Use for run pipeline with specific work directory and report with Nextflow. Exact CLI syntax to run pipeline with specific work directory and report using Nextflow.
When to use this: Use for run pipeline with specific work directory and report with Nextflow.
Command Syntax
nextflow run <workflow> -work-dir <path/to/directory> -with-report <report.html>nextflow run <workflow> -work-dir <path/to/directory> -with-report <report.html>Command Breakdown
-work-dir- Command Option
- Tool-specific option used by this command invocation.
-with-report- Command Option
- Tool-specific option used by this command invocation.
FAQ
Purpose: Exact syntax to run pipeline with specific work directory and report using Nextflow.
Test path: Replace placeholders and run destructive commands in a disposable workspace first.
Flag behavior: Tool version, platform, and shell can change behavior.
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Related Operations
Nextflow Command: List All Downloaded Projects
nextflow list Nextflow Command: Pull Latest Version Of Remote Workflow From Bitbucket nextflow pull <user/repo> -hub bitbucket Nextflow Command: Remove Cache And Intermediate Files For Specific Run nextflow clean -force <run_name> Nextflow Command: Run Pipeline Resume Cached Results nextflow run <main.nf> -resume Nextflow Command: Run Remote Workflow Specific Release nextflow run <user/repo> -revision <release_tag>